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wangys_biolab
effector-gan
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c3e72636
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c3e72636
authored
Feb 15, 2022
by
wangys_biolab
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c3e72636
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@@ -39,24 +39,28 @@ sklearn
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@@ -39,24 +39,28 @@ sklearn
**(./prPred/dist/prPred)**
**(./prPred/dist/prPred)**
export PATH=$PATH:/xxxx/xxxx/xxxx/prPred/dist/prPred
` export PATH=$PATH:/xxxx/xxxx/xxxx/prPred/dist/prPred`
## Input parameters
## Input parameters
prPred -h
```
prPred -h
$ -i inputfile in FASTA format
$ -i inputfile in FASTA format
$ -o output folder
$ -o output folder
```
### usage
### usage
prPred -i /xxxx/xxxx/test/test.fasta -o result
`prPred -i /xxxx/xxxx/test/test.fasta -o result `
**or**
**or**
**Using absolute path to invoke prPred.py (/xxxx/xxxx/prPred/prPred.py)**
**Using absolute path to invoke prPred.py (/xxxx/xxxx/prPred/prPred.py)**
python xxxx/xxxx/prPred/prPred.py -i /xxxx/xxxx/test/test.fasta -o /xxxx/xxxxx/result
` python xxxx/xxxx/prPred/prPred.py -i /xxxx/xxxx/test/test.fasta -o /xxxx/xxxxx/result `
###**Output file**
###**Output file**
domain_result
> domain_result
R_protein_possibility.fasta
> R_protein_possibility.fasta
## For split_fasta.py
## For split_fasta.py
**Analyze your sequences one by one**
**Analyze your sequences one by one**
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