Update README.md

README.md

@@ -28,24 +28,32 @@ Before running Effector-GAN, users should make sure all the following packages a
   Activate conda environment:
     
   `source activate Effector-GAN`
+  
+  For python3.7 
+  
+  If you have GPU  # CUDA 9.2
+  
+  `pip install torch==1.2.0 torchvision==0.4.0 `
+  
+  If you have GPU CUDA 10.0  
     
-
+  `pip install torch==1.2.0+cu92 torchvision==0.4.0+cu92 -f https://download.pytorch.org/whl/torch_stable.html`
+   
+  CPU Only python3.7
+    
+  `pip install torch==1.2.0+cpu torchvision==0.4.0+cpu -f https://download.pytorch.org/whl/torch_stable.html`
+  
+  other packages 
+   
     pip3 install joblib==1.0.1  
     pip3 install tape_proteins==0.4 
     pip3 install numpy==1.19.2 
     pip3 install pandas==1.2.0 
     pip3 install Bio==0.4.1 
-    sklearn
-#### For python3.7 
-#### If you have GPU  # CUDA 9.2   
-    pip install torch==1.2.0 torchvision==0.4.0 
-#### If you have GPU CUDA 10.0  
-    pip install torch==1.2.0+cu92 torchvision==0.4.0+cu92 -f https://download.pytorch.org/whl/torch_stable.html
-#### CPU Only python3.7
-    pip install torch==1.2.0+cpu torchvision==0.4.0+cpu -f https://download.pytorch.org/whl/torch_stable.html 
+    pip3 install sklearn
 
 
-###**prPred**
+##**Effector-GAN**
 
     git clone git@github.com:Wangys-prog/prPred.git  
 
@@ -74,20 +82,15 @@ prPred -h
 >     R_protein_possibility.fasta
 
 
-## For split_fasta.py
-**Analyze your sequences one by one**  
-**Before using the script,please add prPred into into environment variables**
-    
-      python split_fasta.py -i your fasta file
- 
-## For windows 10 or later
+## WGAN.py
+
+   Synthetic protein feature samples based on generative adversarial networks
 
-**Download Ubuntu xx.x LTS from Microsoft Store**
+## CTST2.py
+   
+   Effector-GAN uses the leave-one-out cross-validation (LOOCV) method based on K nearest neighbor algorithm (KNN; K=1) classifier to evaluate the optimal synthetic protein feature samples, which are used to augment the original positive training samples
 
-    cd ../../
-    cd mnt/x/xxxx/xxxx/
-    git clone git@github.com:Wangys-prog/prPred.git
-    cd mnt/x/xxxx/xxxx/prPred/  
+ 
 
 ## **If you use prPred, please cite:** 
     (1) Wang Y, Wang P, Guo Y, et al. prPred: A Predictor to Identify Plant Resistance Proteins by Incorporating k-Spaced Amino Acid (Group) Pairs[J]. Frontiers in bioengineering and biotechnology, 2021, 8: 1593.