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wangys_biolab
effector-gan
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84adabc1
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84adabc1
authored
Feb 15, 2022
by
wangys_biolab
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@@ -21,29 +21,29 @@ Before running Effector-GAN, users should make sure all the following packages a
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@@ -21,29 +21,29 @@ Before running Effector-GAN, users should make sure all the following packages a
## **Installation**
## **Installation**
Create an Python3.7 environment using conda:
**Create an Python3.7 environment using conda:**
`conda create -n Effector-GAN python=3.7`
`conda create -n Effector-GAN python=3.7`
Activate conda environment:
**Activate conda environment:**
`source activate Effector-GAN`
`source activate Effector-GAN`
For python3.7
** For python3.7 **
If you have GPU # CUDA 9.2
**If you have GPU # CUDA 9.2**
`pip install torch==1.2.0 torchvision==0.4.0 `
`pip install torch==1.2.0 torchvision==0.4.0 `
If you have GPU CUDA 10.0
**If you have GPU CUDA 10.0 **
`pip install torch==1.2.0+cu92 torchvision==0.4.0+cu92 -f https://download.pytorch.org/whl/torch_stable.html`
`pip install torch==1.2.0+cu92 torchvision==0.4.0+cu92 -f https://download.pytorch.org/whl/torch_stable.html`
CPU Only python3.7
**CPU Only python3.7**
`pip install torch==1.2.0+cpu torchvision==0.4.0+cpu -f https://download.pytorch.org/whl/torch_stable.html`
`pip install torch==1.2.0+cpu torchvision==0.4.0+cpu -f https://download.pytorch.org/whl/torch_stable.html`
other packages
** other packages**
pip3 install joblib==1.0.1
pip3 install joblib==1.0.1
pip3 install tape_proteins==0.4
pip3 install tape_proteins==0.4
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@@ -60,10 +60,9 @@ Before running Effector-GAN, users should make sure all the following packages a
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@@ -60,10 +60,9 @@ Before running Effector-GAN, users should make sure all the following packages a
## Input parameters
## Input parameters
> Effector-GAN.py -h
Effector-GAN.py -h
> $ -i inputfile in FASTA format
$ -i inputfile in FASTA format
> $ -o output folder
$ -o output folder
### usage
### usage
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